!
!  ROMS/TOMS Cohesive and Non-cohesive Sediment Model Parameters.
!
!svn $Id: sediment_adria02.in 1001 2020-01-10 22:41:16Z arango $
!========================================================= Hernan G. Arango ===
!  Copyright (c) 2002-2020 The ROMS/TOMS Group                                !
!    Licensed under a MIT/X style license                                     !
!    See License_ROMS.txt                                                     !
!==============================================================================
!                                                                             !
! Input parameters can be entered in ANY order, provided that the parameter   !
! KEYWORD (usually, upper case) is typed correctly followed by "="  or "=="   !
! symbols. Any comment lines are allowed and must begin with an exclamation   !
! mark (!) in column one.  Comments may  appear to the right of a parameter   !
! specification to improve documentation.  Comments will be ignored  during   !
! reading.  Blank lines are also allowed and ignored. Continuation lines in   !
! a parameter specification are allowed and must be preceded by a backslash   !
! (\).  In some instances, more than one value is required for a parameter.   !
! If fewer values are provided, the  last value  is assigned for the entire   !
! parameter array.  The multiplication symbol (*),  without blank spaces in   !
! between, is allowed for a parameter specification.  For example, in a two   !
! grids nested application:                                                   !
!                                                                             !
!    AKT_BAK == 2*1.0d-6  2*5.0d-6              ! m2/s                        !
!                                                                             !
! indicates that the first two entries of array AKT_BAK,  in fortran column-  !
! major order, will have the same value of "1.0d-6" for grid 1,  whereas the  !
! next two entries will have the same value of "5.0d-6" for grid 2.           !
!                                                                             !
! In multiple levels of nesting and/or multiple connected domains  step-ups,  !
! "Ngrids" entries are expected for some of these parameters.  In such case,  !
! the order of the entries for a parameter is extremely important.  It  must  !
! follow the same order (1:Ngrids) as in the state variable declaration. The  !
! USER may follow the above guidelines for specifying his/her values.  These  !
! parameters are marked by "==" plural symbol after the KEYWORD.              !
!                                                                             !
!==============================================================================
!
!------------------------------------------------------------------------------
! Sediment model control switch.
!------------------------------------------------------------------------------

! Switch is used to control sediment model computation within nested and/or
! multiple connected grids, [1:Ngrids].

   Lsediment == T

!------------------------------------------------------------------------------
! Tracer horizontal and vertical advection scheme.
!------------------------------------------------------------------------------
!
! Set horizontal and vertical advection schemes for sediment tracers.
! A different advection scheme is allowed for each tracer. For example,
! a positive-definite (monotonic) algorithm can be activated for
! salinity and biological tracers, while a different one is set for
! temperature. [1:NAT+NPT,Ngrids] values are expected.
!
!   Keyword    Advection Algorithm
!
!   A4         4th-order Akima (horizontal/vertical)
!   C2         2nd-order centered differences (horizontal/vertical)
!   C4         4th-order centered differences (horizontal/vertical)
!   HSIMT      3th-order HSIMT-TVD (horizontal/vertical)
!   MPDATA     recursive flux corrected MPDATA (horizontal/vertical)
!   SPLINES    parabolic splines (only vertical)
!   SU3        split third-order upstream (horizontal/vertical)
!   U3         3rd-order upstream-biased (only horizontal)
!
! The user has the option of specifying the full Keyword or the first
! two letters, regardless if using uppercase or lowercase. If nested
! grids, specify values for each grid.

   Hadvection == HSIMT                          ! idsed(:), compact

   Vadvection == HSIMT                          ! idsed(:), compact

! Adjoint-based algorithms can have different horizontal and schemes
! for active and inert tracers.

ad_Hadvection == U3                             ! idsed(:), compact

ad_Vadvection == C4                             ! idsed(:), compact

!------------------------------------------------------------------------------
! Lateral boundary condition flags for all sediment tracers.
!------------------------------------------------------------------------------
!
! Set lateral boundary conditions keyword. Notice that a value is expected
! for each boundary segment per nested grid for each state variable.
!
! The sediment tracer variables (cohesive and noncohesive) require
! [1:4,1:NCS+NNS,Ngrids] values. If specifying every tracer, enter first
! 1:NCS cohesive sediment entries followed by 1:NNS noncohesive sediment
! entries. The boundary order is: 1=west, 2=south, 3=east, and 4=north.
! That is, anticlockwise starting at the western boundary.
!
! The keyword is case insensitive and usually has three characters. However,
! it is possible to have compound keywords, if applicable. For example, the
! keyword "RadNud" implies radiation boundary condition with nudging. This
! combination is usually used in active/passive radiation conditions.
!
! NOTICE: It is possible to specify the lateral boundary conditions for
! ======  all sediment tracers (cohesive and noncohesive) in a compact
! form with a single entry. If so, all the sediment tracers are assumed to
! have the same boundary condition as in the single entry.
!
!   Keyword    Lateral Boundary Condition Type
!
!   Cla        Clamped                                _____N_____     j=Mm
!   Clo        Closed                                |     4     |
!   Gra        Gradient                              |           |
!   Nes        Nested                              1 W           E 3
!   Nud        Nudging                               |           |
!   Per        Periodic                              |_____S_____|
!   Rad        Radiation                                   2          j=1
!                                                   i=1         i=Lm
!                   W       S       E       N
!                   e       o       a       o
!                   s       u       s       r
!                   t       t       t       t
!                           h               h
!
!                   1       2       3       4

   LBC(isTvar) ==   Clo     Clo     Rad     Clo      ! idsed(:), compact

! Adjoint-based algorithms can have different lateral boundary
! conditions keywords.

ad_LBC(isTvar) ==   Clo     Clo     Rad     Clo      ! idsed(:), compact

!------------------------------------------------------------------------------
! General sediment bed model parameters.
!------------------------------------------------------------------------------

! Depositional bed layer thickness criteria to create a new layer (m). If
! deposition exceeds this value, then a new layer is created, [1:Ngrids].

    NEWLAYER_THICK == 0.01d0

! Bed load transport rate coefficient. [1:Ngrids].

     BEDLOAD_COEFF == 0.05d0

! Logical switches (TRUE/FALSE) to activate writing of bed layer parameters,
! [1:Ngrids] values expected.

 Hout(ithck) == T       ! bed_thickness           sediment layer thickness
 Hout(iaged) == T       ! bed_age                 sediment layer age
 Hout(iporo) == T       ! bed_porosity            sediment layer porosity
 Hout(idiff) == F       ! bed_biodiff             biodiffusivity

! Logical switches (TRUE/FALSE) to activate writing of bed bottom sediment
! parameters, [1:Ngrids] values expected.

 Hout(isd50) == T       ! grain_diameter          mean grain diameter
 Hout(idens) == T       ! grain_density           mean grain density
 Hout(iwsed) == F       ! settling_vel            mean settling velocity
 Hout(itauc) == T       ! erosion_stress          critical erosion stress
 Hout(irlen) == T       ! ripple_length           ripple length
 Hout(irhgt) == T       ! ripple_height           ripple height
 Hout(ibwav) == T       ! bed_wave_amp            wave excursion amplitude
 Hout(izdef) == F       ! Zo_def                  default bottom roughness
 Hout(izapp) == T       ! Zo_app                  apparent bottom roughness
 Hout(izNik) == T       ! Zo_Nik                  Nikuradse bottom roughness
 Hout(izbio) == F       ! Zo_bio                  biological bottom roughness
 Hout(izbfm) == F       ! Zo_bedform              bed form bottom roughness
 Hout(izbld) == F       ! Zo_bedload              bed load bottom roughness
 Hout(izwbl) == F       ! Zo_wbl                  wave bottom roughness
 Hout(iactv) == T       ! active_layer_thickness  active layer thickness
 Hout(ishgt) == F       ! saltation               saltation height

! Logical switches (TRUE/FALSE) to activate writing of bed layer parameters
! into QUICKSAVE output files, [1:Ngrids] values expected.

 Qout(ithck) == F       ! bed_thickness           sediment layer thickness
 Qout(iaged) == F       ! bed_age                 sediment layer age
 Qout(iporo) == F       ! bed_porosity            sediment layer porosity
 Qout(idiff) == F       ! bed_biodiff             biodiffusivity

! Logical switches (TRUE/FALSE) to activate writing of bed bottom sediment
! parameters into HISTORY output files, [1:Ngrids] values expected.

 Qout(isd50) == F       ! grain_diameter          mean grain diameter
 Qout(idens) == F       ! grain_density           mean grain density
 Qout(iwsed) == F       ! settling_vel            mean settling velocity
 Qout(itauc) == F       ! erosion_stress          critical erosion stress
 Qout(irlen) == F       ! ripple_length           ripple length
 Qout(irhgt) == F       ! ripple_height           ripple height
 Qout(ibwav) == F       ! bed_wave_amp            wave excursion amplitude
 Qout(izdef) == F       ! Zo_def                  default bottom roughness
 Qout(izapp) == F       ! Zo_app                  apparent bottom roughness
 Qout(izNik) == F       ! Zo_Nik                  Nikuradse bottom roughness
 Qout(izbio) == F       ! Zo_bio                  biological bottom roughness
 Qout(izbfm) == F       ! Zo_bedform              bed form bottom roughness
 Qout(izbld) == F       ! Zo_bedload              bed load bottom roughness
 Qout(izwbl) == F       ! Zo_wbl                  wave bottom roughness
 Qout(iactv) == F       ! active_layer_thickness  active layer thickness
 Qout(ishgt) == F       ! saltation               saltation height

!------------------------------------------------------------------------------
! Non-cohesive Sediment Parameters, [1:NNS,1:Ngrids] values expected.
!------------------------------------------------------------------------------

! Median sediment grain diameter (mm).

   SAND_SD50 == 1.0d0

! Sediment concentration (kg/m3).

   SAND_CSED == 0.0d0

! Sediment grain density (kg/m3).

   SAND_SRHO == 2650.0d0

! Particle settling velocity (mm/s).

   SAND_WSED == 1.0d0

! Surface erosion rate (kg/m2/s).

  SAND_ERATE == 1.0d-4

! Critical shear for erosion and deposition (N/m2).

 SAND_TAU_CE == 0.02d0
 SAND_TAU_CD == 0.02d0

! Porosity (nondimensional: 0.0-1.0):  Vwater/(Vwater+Vsed).

  SAND_POROS == 0.5d0

! Harmonic/biharmonic horizontal diffusion of tracer for nonlinear model
! and adjoint-based algorithms.

   SAND_TNU2 == 0.0d0                           ! m2/s
   SAND_TNU4 == 0.0d0                           ! m4/s

ad_SAND_TNU2 == 0.0d0                           ! m2/s
ad_SAND_TNU4 == 0.0d0                           ! m4/s

! Logical switches (TRUE/FALSE) to increase horizontal diffusivity
! of noncohesive sediment trace in specific areas of the application
! domain (like sponge areas) for the desired grid:

 SAND_Sponge == F

! Vertical mixing coefficients for tracers in nonlinear model and
! basic state scale factor in adjoint-based algorithms.

SAND_AKT_BAK == 5.0d-6                          ! m2/s

SAND_AKT_fac == 1.0d0                           ! nondimensional

! Nudging/relaxation time scales, inverse scales will be computed
! internally.

  SAND_TNUDG == 0.0d0                           ! days

! Morphological time scale factor (greater than or equal to 1.0). A
! value of 1.0 has no scale effect.

SAND_MORPH_FAC == 1.0d0                         ! nondimensional

! Logical switches (TRUE/FALSE) to activate tracers point Sources/Sinks
! (like river runoff) and to specify which tracer variables to consider.
! See glossary below for details.

  SAND_Ltsrc == F

! Logical switches (TRUE/FALSE) to read and process noncohesive sediment
! tracers climatology. See glossary below for details.

  SAND_Ltclm == F

! Logical switches (TRUE/FALSE) to nudge the desired noncohesive sediment
! tracer climatology field. If not analytical climatology fields, users
! need to turn on the logical switches above to process the fields from
! the climatology NetCDF file that are needed for nudging. See glossary
! below for details.

 SAND_Tnudge == F

! Logical switches (TRUE/FALSE) to activate writing of non-cohesive
! sediment fields into HISTORY output file.

Hout(idsand) == T       ! sand_01, ...            suspended concentration
Hout(iSfrac) == T       ! sandfrac_01, ...        bed layer fraction
Hout(iSmass) == T       ! sandmass_01, ...        bed layer mass
Hout(iSUbld) == T       ! bedload_Usand_01, ...   bed load at U-points
Hout(iSVbld) == T       ! bedload_Vsand_01, ...   bed load at V-points

! Logical switches (TRUE/FALSE) to activate writing of non-cohesive
! sediment fields into QUICKSAVE output file.

Qout(idsand) == F       ! sand_01, ...            suspended concentration
Qout(iSsand) == F       ! sand_01_sur, ...        surface concentration
Qout(iSfrac) == F       ! sandfrac_01, ...        bed layer fraction
Qout(iSmass) == F       ! sandmass_01, ...        bed layer mass
Qout(iSUbld) == F       ! bedload_Usand_01, ...   bed load at U-points
Qout(iSVbld) == F       ! bedload_Vsand_01, ...   bed load at V-points

! Logical switches (TRUE/FALSE) to activate writing of time-averaged
! non-cohesive sediment fields into AVERAGE output file.

Aout(idsand) == T       ! sand_01, ...            suspended concentration

Aout(iSTTav) == F       ! sand_01_2, ...          quadratic <t*t> tracer terms
Aout(iSUTav) == F       ! u_sand_01, ...          quadratic <u*t> tracer terms
Aout(iSVTav) == F       ! v_sand_01, ...          quadratic <v*t> tracer terms
Aout(SHUTav) == F       ! Huon_sand_01, ...       tracer volume flux, <Huon*t>
Aout(SHVTav) == F       ! Hvom_sand_01, ...       tracer volume flux, <Hvom*t>

Aout(iSUbld) == T       ! bedload_Usand_01, ...   bed load at U-points
Aout(iSVbld) == T       ! bedload_Vsand_01, ...   bed load at V-points

! Logical switches (TRUE/FALSE) to activate writing of time-averaged,
! non-cohesive sediment diagnostic terms into DIAGNOSTIC output file.

Dout(STrate) == T       ! sand_01_rate, ...       time rate of change
Dout(SThadv) == T       ! sand_01_hadv, ...       horizontal total advection
Dout(STxadv) == T       ! sand_01_xadv, ...       horizontal XI-advection
Dout(STyadv) == T       ! sand_01_yadv, ...       horizontal ETA-advection
Dout(STvadv) == T       ! sand_01_vadv, ...       vertical advection
Dout(SThdif) == T       ! sand_01_hdiff, ...      horizontal total diffusion
Dout(STxdif) == T       ! sand_01_xdiff, ...      horizontal XI-diffusion
Dout(STydif) == T       ! sand_01_ydiff, ...      horizontal ETA-diffusion
Dout(STsdif) == T       ! sand_01_sdiff, ...      horizontal S-diffusion
Dout(STvdif) == T       ! sand_01_vdiff, ...      vertical diffusion

!------------------------------------------------------------------------------
! Suspended Cohesive Sediment Parameters, [1:NCS,1:Ngrids] values expected.
!------------------------------------------------------------------------------

! Median sediment grain diameter (mm).

    MUD_SD50 == 0.015d0 0.063d0 0.125d0 0.225d0 0.015d0 0.063d0 0.015d0 0.063d0

! Sediment concentration (kg/m3).

    MUD_CSED == 8*0.0d0

! Sediment grain density (kg/m3).

    MUD_SRHO == 8*2650.0d0

! Particle settling velocity (mm/s).

    MUD_WSED == 0.2d0 3.0d0 10.0d0 10.0d0 0.2d0 3.0d0 0.2d0 3.0d0

! Surface erosion rate (kg/m2/s).

   MUD_ERATE == 3*5.0d-4 0.1d-8 4*5.0d-4

! Critical shear for erosion and deposition (N/m2).

  MUD_TAU_CE == 0.03d0 0.08d0 0.12d0 9.99d0 0.03d0 0.08d0 0.03d0 0.08d0
  MUD_TAU_CD == 0.01d0 0.01d0 0.01d0 0.01d0 0.01d0 0.01d0 0.01d0 0.01d0

! Porosity (nondimensional: 0.0-1.0):  Vwater/(Vwater+Vsed).

   MUD_POROS == 8*0.0d0

! Harmonic/biharmonic horizontal diffusion of tracer for nonlinear model
! and adjoint-based algorithms.

    MUD_TNU2 == 8*0.0d0                         ! m2/s
    MUD_TNU4 == 8*0.0d0                         ! m4/s

 ad_MUD_TNU2 == 8*0.0d0                         ! m2/s
 ad_MUD_TNU4 == 8*0.0d0                         ! m4/s

! Logical switches (TRUE/FALSE) to increase horizontal diffusivity
! of cohesive sediment trace in specific areas of the application
! domain (like sponge areas) for the desired grid:

  MUD_Sponge == 8*F

! Vertical mixing coefficients for tracers in nonlinear model and
! basic state scale factor in adjoint-based algorithms.

 MUD_AKT_BAK == 8*5.0d-6                        ! m2/s

 MUD_AKT_fac == 8*1.0d0                         ! nondimensional

! Nudging/relaxation time scales, inverse scales will be computed
! internally.

   MUD_TNUDG == 8*0.0d0                         ! days

! Morphological time scale factor (greater than or equal to 1.0). A
! value of 1.0 has no scale effect.

MUD_MORPH_FAC == 8*1.0d0                        ! nondimensional

! Logical switches (TRUE/FALSE) to activate tracers point Sources/Sinks
! (like river runoff) and to specify which tracer variables to consider.
! See glossary below for details.

   MUD_Ltsrc == 8*F

! Logical switches (TRUE/FALSE) to read and process cohesive sediment
! tracers climatology. See glossary below for details.

   MUD_Ltclm == 8*F

! Logical switches (TRUE/FALSE) to nudge the desired cohesive sediment
! tracer climatology field. If not analytical climatology fields, users
! need to turn on the logical switches above to process the fields from
! the climatology NetCDF file that are needed for nudging. See glossary
! below for details.

  MUD_Tnudge == 8*F

! Logical switches (TRUE/FALSE) to activate writing of cohesive sediment
! fields into HISTORY output file.

Hout(idmud)  == T       ! mud_01, ...             suspended concentration
Hout(iMfrac) == T       ! mudfrac_01, ...         bed layer fraction
Hout(iMmass) == T       ! mudmass_01, ...         bed layer mass
Hout(iMUbld) == T       ! bedload_Umud_01, ...    bed load at U-points
Hout(iMVbld) == T       ! bedload_Vmud_01, ...    bed load at V-points

! Logical switches (TRUE/FALSE) to activate writing of non-cohesive
! sediment fields into QUICKSAVE output file.

Qout(idsand) == F       ! sand_01, ...            suspended concentration
Qout(iSsand) == F       ! sand_01_sur, ...        surface concentration
Qout(iSfrac) == F       ! sandfrac_01, ...        bed layer fraction
Qout(iSmass) == F       ! sandmass_01, ...        bed layer mass
Qout(iSUbld) == F       ! bedload_Usand_01, ...   bed load at U-points
Qout(iSVbld) == F       ! bedload_Vsand_01, ...   bed load at V-points

! Logical switches (TRUE/FALSE) to activate writing of time-averaged
! cohesive sediment fields into AVERAGE output file.

Aout(idmud)  == T       ! mud_01, ...             suspended concentration

Aout(iMTTav) == F       ! mud_01_2, ...           quadratic <t*t> tracer terms
Aout(iMUTav) == F       ! u_mud_01, ...           quadratic <u*t> tracer terms
Aout(iMVTav) == F       ! v_mud_01, ...           quadratic <v*t> tracer terms
Aout(MHUTav) == F       ! Huon_mud_01, ...        tracer volume flux, <Huon*t>
Aout(MHVTav) == F       ! Hvom_mud_01, ...        tracer volume flux, <Hvom*t>

Aout(iMUbld) == T       ! bedload_Umud_01, ...    bed load at U-points
Aout(iMVbld) == T       ! bedload_Vmud_01, ...    bed load at V-points

! Logical switches (TRUE/FALSE) to activate writing of time-averaged,
! cohesive sediment diagnostic terms into DIAGNOSTIC output file.

Dout(MTrate) == T       ! mud_01_rate, ...        time rate of change
Dout(MThadv) == T       ! mud_01_hadv, ...        horizontal total advection
Dout(MTxadv) == T       ! mud_01_xadv, ...        horizontal XI-advection
Dout(MTyadv) == T       ! mud_01_yadv, ...        horizontal ETA-advection
Dout(MTvadv) == T       ! mud_01_vadv, ...        vertical advection
Dout(MThdif) == T       ! mud_01_hdiff, ...       horizontal total diffusion
Dout(MTxdif) == T       ! mud_01_xdiff, ...       horizontal XI-diffusion
Dout(MTydif) == T       ! mud_01_ydiff, ...       horizontal ETA-diffusion
Dout(MTsdif) == T       ! mud_01_sdiff, ...       horizontal S-diffusion
Dout(MTvdif) == T       ! mud_01_vdiff, ...       vertical diffusion

!
!  GLOSSARY:
!  =========
!
!------------------------------------------------------------------------------
! Sediment model control switch, [1:Ngrids].
!------------------------------------------------------------------------------
!
!  Lsediment       Switch to control sediment model computation within nested
!                    and/or multiple connected grids. By default this switch
!                    is set to TRUE in "mod_scalars" for all grids. The USER
!                    has the option, for example, to compute sediment in just
!                    one of the nested grids. If so, this switch needs to be
!                    consistent with the dimension parameter NST in input
!                    script (roms.in).  In order to make the model more
!                    efficient in  memory usage, NST(:) should be zero in
!                    such grids.
!
!------------------------------------------------------------------------------
! Tracer advection scheme.
!------------------------------------------------------------------------------
!
! It is more advantageous to set the horizontal and vertical advection schemes
! for each tracer with switches instead of a single CPP flag for all of them.
! Positive-definite and monotonic algorithms (i.e., MPDATA and HSIMT) are
! appropriate and useful for positive fields like salinity, inert, biological,
! and sediment tracers.  However, since the temperature has a dynamic range
! with negative and positive values in the ocean, other advection schemes are
! more appropriate.
!
! Currently, the following tracer advection schemes are available and are
! activated using the associated Keyword:
!
!   Keyword    Advection Algorithm
!
!   A4         4th-order Akima (horizontal/vertical)
!   C2         2nd-order centered differences (horizontal/vertical)
!   C4         4th-order centered differences (horizontal/vertical)
!   HSIMT      3th-order HSIMT with TVD limiter (horizontal/vertical)
!   MPDATA     recursive flux corrected MPDATA (horizontal/vertical)
!   SPLINES    parabolic splines reconstruction (only vertical)
!   SU3        split third-order upstream (horizontal/vertical)
!   U3         3rd-order upstresm-bias (only horizontal)
!
! The user has the option of specifying the full Keyword or the first
! two letters, regardless if using uppercase or lowercase.
!
! If using either HSIMT (Wu and Zhu, 2010) or MPDATA (Margolin and
! Smolarkiewicz, 1998) options, the user needs to set the same scheme
! for both horizontal and vertical advection to preserve monotonicity.
!
! Hadvection     Horizontal advection for each active (temperature and
!                  salinity) and inert tracers, [1:NAT+NPT,Ngrids]
!                  values are expected.
!
! Vadvection     Vertical advection for each active (temperature and
!                  salinity) and inert tracers, [1:NAT+NPT,Ngrids]
!                  values are expected.
!
! ad_Hadvection  Horizontal advection for each active (temperature and
!                  salinity) and inert tracers in the adjoint-based
!                  algorithms, [1:NAT+NPT,Ngrids] values are expected.
!
! ad_Vadvection  Vertical advection for each active (temperature and
!                  salinity) and inert tracers in the adjoint-based
!                  algorithms, [1:NAT+NPT,Ngrids] values are expected.
!
! Examples:
!
!  Hadvection == A4       \                     ! temperature
!                MPDATA   \                     ! salinity
!                HSIMT    \                     ! dye_01, inert(1)
!                HSIMT                          ! dy2_02, inert(2)
!
!  Vadvection == A4       \                     ! temperature
!                MPDATA   \                     ! salinity
!                HSIMT    \                     ! dye_01, inert(1)
!                HSIMT                          ! dye_02, inert(2)
!
! or in nested applications
!
!  Hadvection == U3       \                     ! temperature, Grid 1
!                U3       \                     ! temperature, Grid 2
!                U3       \                     ! temperature, Grid 3
!                HSIMT    \                     ! salinity,    Grid 1
!                HSIMT    \                     ! salinity,    Grid 2
!                HSIMT                          ! salinity,    Grid 3
!
!  Vadvection == C4       \                     ! temperature, Grid 1
!                C4       \                     ! temperature, Grid 2
!                C4       \                     ! temperature, Grid 3
!                HSIMT    \                     ! salinity,    Grid 1
!                HSIMT    \                     ! salinity,    Grid 2
!                HSIMT                          ! salinity,    Grid 3
!
! It is convinient to use the compact specification format for biological and
! sediment passive tracers as:
!
!  Hadvection == HSIMT                          ! idsed(:), compact
!
!  Vadvection == HSIMT                          ! idsed(:), compact
!
! when all the passive tracers have the same horizontal and vertical tracer
! advection scheme.
!
!------------------------------------------------------------------------------
! Lateral boundary conditions parameters for all sediment tracers.
!------------------------------------------------------------------------------
!
! The lateral boundary conditions are now specified with logical switches
! instead of CPP flags to allow nested grid configurations. Their values are
! load into structured array:
!
!    LBC(1:4, nLBCvar, Ngrids)
!
! where 1:4 are the number of boundary edges, nLBCvar are the number LBC state
! variables, and Ngrids is the number of nested grids. For Example, to apply
! gradient boundary conditions to any tracer we use:
!
!    LBC(iwest,  isTvar(itrc), ng) % gradient
!    LBC(ieast,  isTvar(itrc), ng) % gradient
!    LBC(isouth, isTvar(itrc), ng) % gradient
!    LBC(inorth, isTvar(itrc), ng) % gradient
!
! The lateral boundary conditions for all sediment tracers (cohesive plus
! noncohesive) are entered with a keyword. This keyword is case insensitive
! and usually has three characters. However, it is possible to have compound
! keywords, if applicable. For example, the keyword "RadNud" implies radiation
! boundary condition with nudging. This combination is usually used in
! active/passive radiation conditions.
!
! It is possible to specify the lateral boundary conditions for all sediment
! tracers in a compact form with a single entry.  for example, in a East-West
! periodic application we can just have:
!
!                   W       S       E       N
!                   e       o       a       o
!                   s       u       s       r
!                   t       t       t       t
!                           h               h
!
!                   1       2       3       4
!
!  LBC(isTvar) ==   Per     Clo     Per     Clo
!
! Then, the standard input processing routine will assume that all the
! sediment tracers have the same lateral boundary condition specified by
! the single entry.
!
!   Keyword    Lateral Boundary Condition Type
!
!   Cla        Clamped                                _____N_____     j=Mm
!   Clo        Closed                                |     4     |
!   Gra        Gradient                              |           |
!   Nes        Nested                              1 W           E 3
!   Nud        Nudging                               |           |
!   Per        Periodic                              |_____S_____|
!   Rad        Radiation                                   2          j=1
!                                                   i=1         i=Lm
!
!  LBC(isTvar)    Sediment Tracers, [1:4, 1:NST, Ngrids] values are expected.
!
! Similarly, the adjoint-based algorithms (ADM, TLM, RPM) can have different
! lateral boundary conditions keywords:
!
!  ad_LBC(isTvar) Sediment Tracers, [1:4, 1:NBT, Ngrids] values are expected.
!
!------------------------------------------------------------------------------
! General sediment bed model controls, [1:Ngrids] values are expected.
!------------------------------------------------------------------------------
!
! Formulation parameters:
!
!  NEWLAYER_THICK  Depositional bed layer thickness criteria to create a new
!                    layer (m). If deposition exceeds this value, then a new
!                    layer is created.
!
!  BEDLOAD_COEFF   Bed load transport rate coefficient.
!
! Logical switches (TRUE/FALSE) to activate writing of bed layer parameters
! into output HISTORY NetCDF file:
!
!  Hout(ithck)     Write out sediment layer thickness.
!
!  Hout(iaged)     Write out sediment layer age.
!
!  Hout(iporo)     Write out sediment layer porosity.
!
!  Hout(idiff)     Write out Biodiffusivity at the bottom of each layer.
!
! Logical switches (TRUE/FALSE) to activate writing of bed bottom sediment
! parameters into output HISTORY NetCDF file:
!
!  Hout(isd50)     Write out mean grain diameter.
!
!  Hout(idens)     Write out mean grain density.
!
!  Hout(iwsed)     Write out mean settling velocity.
!
!  Hout(itauc)     Write out critical erosion stress.
!
!  Hout(irlen)     Write out ripple length.
!
!  Hout(irhgt)     Write out ripple height.
!
!  Hout(ibwav)     Write out wave excursion amplitude.
!
!  Hout(izdef)     Write out default bottom roughness.
!
!  Hout(izapp)     Write out apparent bottom roughness.
!
!  Hout(izNik)     Write out Nikuradse bottom roughness.
!
!  Hout(izbio)     Write out biological bottom roughness.
!
!  Hout(izbfm)     Write out bed form bottom roughness.
!
!  Hout(izbld)     Write out bed load bottom roughness.
!
!  Hout(izwbl)     Write out wave bottom roughness.
!
!  Hout(iactv)     Write out active layer thickness.
!
!  Hout(ishgt)     Write out saltation height.
!
! Logical switches (TRUE/FALSE) to activate writing of bed layer parameters
! into output QUICKSAVE NetCDF file:
!
!  Qout(ithck)     Write out sediment layer thickness.
!
!  Qout(iaged)     Write out sediment layer age.
!
!  Qout(iporo)     Write out sediment layer porosity.
!
!  Qout(idiff)     Write out Biodiffusivity at the bottom of each layer.
!
! Logical switches (TRUE/FALSE) to activate writing of bed bottom sediment
! parameters into output QUICKSAVE NetCDF file:
!
!  Qout(isd50)     Write out mean grain diameter.
!
!  Qout(idens)     Write out mean grain density.
!
!  Qout(iwsed)     Write out mean settling velocity.
!
!  Qout(itauc)     Write out critical erosion stress.
!
!  Qout(irlen)     Write out ripple length.
!
!  Qout(irhgt)     Write out ripple height.
!
!  Qout(ibwav)     Write out wave excursion amplitude.
!
!  Qout(izdef)     Write out default bottom roughness.
!
!  Qout(izapp)     Write out apparent bottom roughness.
!
!  Qout(izNik)     Write out Nikuradse bottom roughness.
!
!  Qout(izbio)     Write out biological bottom roughness.
!
!  Qout(izbfm)     Write out bed form bottom roughness.
!
!  Qout(izbld)     Write out bed load bottom roughness.
!
!  Qout(izwbl)     Write out wave bottom roughness.
!
!  Qout(iactv)     Write out active layer thickness.
!
!  Qout(ishgt)     Write out saltation height.
!
!------------------------------------------------------------------------------
! Suspended Non-cohesive Sediment KEYWORDS, [1:NNS,1:Ngrids] values expected.
!------------------------------------------------------------------------------
!
!  SAND_SD50       Median sediment grain diameter (mm).
!
!  SAND_CSED       Sediment concentration (kg/m3). It may be used to initialize
!                    sediment fields using analytical expressions.
!
!  SAND_SRHO       Sediment grain density (kg/m3).
!
!  SAND_WSED       Particle settling velocity (mm/s).
!
!  SAND_Erate      Surface erosion rate (kg/m2/s).
!
!  SAND_TAU_CE     Critical shear for erosion (N/m2).
!
!  SAND_TAU_CD     Critical shear for deposition (N/m2).
!
!  SAND_POROS      Porosity (nondimensional: 0.0-1.0):  Vwater/(Vwater+Vsed).
!
!  SAND_TNU2       Nonlinar model lateral, harmonic, constant, mixing
!                    coefficient (m2/s) for suspended non-cohesive sediment;
!                    [1:NNS,1:Ngrids]. If variable horizontal diffusion
!                    is activated, SAND_TNU2 is the mixing coefficient for
!                    the largest grid-cell in the domain.
!
!  SAND_TNU4       Nonlinar model lateral, harmonic, constant, mixing
!                    coefficient (m4/s) for suspended non-cohesive sediment;
!                    [1:NNS,1:Ngrids]. If variable horizontal diffusion
!                    is activated, SAND_TNU4 is the mixing coefficient for
!                    the largest grid-cell in the domain.
!
!  ad_SAND_TNU2    Adjoint-based algorithms lateral, harmonic, constant,
!                    mixing coefficient (m2/s) for suspended non-cohesive
!                    sediment; [1:NNS,1:Ngrids]. If variable horizontal
!                    diffusion is activated, SAND_TNU2 is the mixing
!                    coefficient for the largest grid-cell in the domain.
!
!  ad_SAND_TNU4    Adjoint-based algorithms lateral, harmonic, constant,
!                    mixing coefficient (m4/s) for suspended non-cohesive
!                    sediment; [1:NNS,1:Ngrids]. If variable horizontal
!                    diffusion is activated, SAND_TNU4 is the mixing
!                    coefficient for the largest grid-cell in the domain.
!
!  SAND_Sponge     Logical switches (TRUE/FALSE) to increase horizontal
!                    diffusivity of noncohesive sediment tracers in sponge
!                    areas of the domain. The CPP option SPONGE is now
!                    deprecated and replaced with this switch to
!                    facilitate or not sponge areas of desired tracer
!                    in a particular nested grid.
!
!  SAND_AKT_BAK    Background vertical mixing coefficient (m2/s),
!                    AKT_BAK(idsed(i)) with i=NCS+1:NST.
!
!  SAND_AKT_fac    Adjoint-based algorithms vertical mixing, basic state,
!                   scale factor (nondimensional) for sediment tracer
!                   variables; [1:NNS,1:Ngrids] values are expected.
!                   In some applications, a smaller/larger values of
!                   vertical mixing are necessary for stability. It is
!                   only used when FORWARD_MIXING is activated.
!
!  SAND_TNUDG      Nudging time scale (days), TNUDG(idsed(i)) with i=NCS+1:NST.
!                    Inverse scale will be computed internally,
!
!  SAND_MORPH_FAC  Morphological time scale factor (nondimensional; greater
!                    than or equal to 1.0). A value of 1.0 has no scale effect.
!
!  SAND_Ltsrc      Logical switches (T/F) to activate noncohesive sediment
!                    tracer variables point Sources/Sinks; [1:NNS,1:Ngrids]
!                    values are expected.
!
!                      SAND_Ltsrc(  1,ng)          sand_01
!                      ...                         ...
!                      SAND_Ltsrc(NNS,ng)          ...
!
!                    Recall that these switches are usually activated to add
!                    river runoff as a point source.  At minimum, it is
!                    necessary to specify both temperature and salinity for
!                    all rivers. The other tracers are optional. The user needs
!                    to know the correspondence between sediment variables and
!                    indices idsed(NCS+1:NST) when activating one or more
!                    of these switches.
!
!                    This logical switch REPLACES and ELIMINATES the need to
!                    have or read the variable "river_flag(river)" in the input
!                    rivers forcing NetCDF file:
!
!                      double river_flag(river)
!                        river_flag:long_name = "river runoff tracer flag"
!                        river_flag:option_0 = "all tracers are off"
!                        river_flag:option_1 = "only temperature"
!                        river_flag:option_2 = "only salinity"
!                        river_flag:option_3 = "both temperature and salinity"
!                        river_flag:units = "nondimensional"
!
!                    This logic was too cumbersome and complicated when
!                    additional tracers are considered. However, this change
!                    is backward compatible.
!
!                    This logical switch will be used to activate the reading
!                    of respective tracer variable from input river forcing
!                    NetCDF file. If you want to add other tracer variables
!                    (other than temperature and salinity) as a source for a
!                    particular river(s), you just need to specify such values
!                    on those river(s). Then, set the values to ZERO on the
!                    other river(s) that do NOT require such river forcing for
!                    that tracer. Recall that you need to specify the tracer
!                    values for all rivers, even if their values are zero.
!
!  SAND_Ltclm      Logical switches (T/F) to process noncohesive sediment
!                    tracer climatology.  The CPP option TCLIMATOLOGY is now
!                    obsolete and replaced with these switches to facilitate
!                    nesting applications. Currently, the CLIMA(ng)%tclm is
!                    used for horizontal mixing, sponges, and nudging.
!
!                      SAND_Ltclm(  1,ng)          sand_01
!                      ...                         ...
!                      SAND_Ltclm(NNS,ng)          ...
!
!                    These switches also controls which climatology tracer
!                    fields needs to be processed.  So we may reduce the
!                    memory allocation for the CLIMA(ng)%tclm array.
!
!  SAND_Tnudge     Logical switches (T/F) to activate nugding of noncohesive
!                    sediment tracer climatology. These switches also control
!                    which sediment tracer variables to nudge. The CPP option
!                    TCLM_NUDGING is now obsolete and replaced with these
!                    switches to facilitate nesting.
!
!                      MUD_Tnudge(  1,ng)          sand_01
!                      ...                         ...
!                      MUD_Tnudge(NNS,ng)          ...
!
!                    User also needs to TURN ON the respective logical switches
!                    "SAND_Ltclm", described above, to process the required 3D
!                    sediment tracer climatology data. This data can be set
!                    with analytical functions (ANA_TCLIMA) or read from input
!                    climatology NetCDF file(s).
!
!                    The nudging coefficients CLIMA(ng)%Tnudgcof can be set
!                    with analytical functions in "ana_nudgcoef.h"  using CPP
!                    option ANA_NUDGCOEF.  Otherwise, it will be read from
!                    NetCDF file NUDNAME.
!
!  Hout(idsand)    Logical switches to activate writing of non-cohesive
!                    sediment concentration into HISTORY NetCDF file,
!                    Hout(idTvar(idsed(i))) with i=1:NCS+1,NST.
!
!  Hout(iSfrac)    Logical switches to activate writing of non-cohesive
!                    sediment class fraction composition of each bed layer
!                    into HISTORY NetCDF file, Hout(idfrac(i)) with
!                    i=NCS+1,NST.
!
!  Hout(iSmass)    Logical switches to activate writing of non-cohesive
!                    sediment mass of each bed layer into HISTORY NetCDF file,
!                    Hout(idsed(i)) with i=NCS+1,NST.
!
!  Hout(iSUbld)    Logical switches to activate writing of non-cohesive
!                    sediment bed load at U-points into HISTORY NetCDF file,
!                    Hout(idsed(i)) with i=NCS+1,NST.
!
!  Hout(iSVbld)    Logical switches to activate writing of non-cohesive
!                    sediment bed load at V-points into HISTORY NetCDF file,
!                    Hout(idsed(i)) with i=NCS+1,NST.
!
!  Qout(idsand)    Logical switches to activate writing of non-cohesive
!                    sediment concentration into QUICKSAVE NetCDF file,
!                    Qout(idTvar(idsed(i))) with i=1:NCS+1,NST.
!
!  Qout(iSfrac)    Logical switches to activate writing of non-cohesive
!                    sediment class fraction composition of each bed layer
!                    into QUICKSAVE NetCDF file, Qout(idfrac(i)) with
!                    i=NCS+1,NST.
!
!  Qout(iSmass)    Logical switches to activate writing of non-cohesive
!                    sediment mass of each bed layer into QUICKSAVE NetCDF
!                     file, Qout(idsed(i)) with i=NCS+1,NST.
!
!  Qout(iSUbld)    Logical switches to activate writing of non-cohesive
!                    sediment bed load at U-points into QUICKSAVE NetCDF
!                    file, Qout(idsed(i)) with i=NCS+1,NST.
!
!  Qout(iSVbld)    Logical switches to activate writing of non-cohesive
!                    sediment bed load at V-points into QUICKSAVE NetCDF
!                    file, Qout(idsed(i)) with i=NCS+1,NST.
!
!  Aout(*S...)     Logical switches to activate writing of time-averaged
!                    non-cohesive sediment concentration into AVERAGE
!                    NetCDF file, Aout(idTvar(idsed(i))) with i=1:NCS+1,NST.
!
!                    Aout(idsand)                 suspended concentration
!
!                    Aout(iSTTav)                 quadratic <t*t> tracer terms
!                    Aout(iSUTav)                 quadratic <u*t> tracer terms
!                    Aout(iSVTav)                 quadratic <v*t> tracer terms
!                    Aout(SHUTav)                 tracer volume flux, <Huon*t>
!                    Aout(SHVTav)                 tracer volume flux, <Hvom*t>
!
!                    Aout(iSUbld)                 bed load at U-points
!                    Aout(iSVbld)                 bed load at V-points
!
!  Dout(ST....)    Logical switches to activate writing of time-averaged
!                    non-cohesive tracers diagnostic terms into DIAGNOSTIC
!                    NetCDF file, Dout(idsed(i),ST....) with i=NCS+1,NST.
!
!                    Dout(STrate)   Time rate of change
!                    Dout(SThadv)   Horizontal total advection
!                    Dout(STxadv)   Horizontal  XI-advection
!                    Dout(STyadv)   Horizontal ETA-advection
!                    Dout(STvadv)   Vertical advection
!                    Dout(SThdif)   Horizontal total diffusion
!                    Dout(STxdif)   Horizonta1  XI-diffusion
!                    Dout(STydif)   Horizontal ETA-diffusion
!                    Dout(STsdif)   Horizontal   S-diffusion
!                    Dout(STvdif)   Vertical diffusion
!
!------------------------------------------------------------------------------
! Suspended Cohesive Sediment KEYWORDS, [1:NCS,1:Ngrids] values expected.
!------------------------------------------------------------------------------
!
!  MUD_SD50        Median sediment grain diameter (mm).
!
!  MUD_CSED        Sediment concentration (kg/m3). It may be used to initialize
!                    sediment fields using analytical expressions.
!
!  MUD_SRHO        Sediment grain density (kg/m3).
!
!  MUD_WSED        Particle settling velocity (mm/s).
!
!  MUD_ERATE       Surface erosion rate (kg/m2/s).
!
!  MUD_TAU_CE      Critical shear for erosion (N/m2).
!
!  MUD_TAU_CD      Critical shear for deposition (N/m2).
!
!  MUD_POROS       Porosity (nondimensional: 0.0-1.0):  Vwater/(Vwater+Vsed).
!
!  MUD_TNU2        Nonlinar model lateral, harmonic, constant, mixing
!                    coefficient (m2/s) for suspended cohesive sediment;
!                    [1:NCS,1:Ngrids]. If variable horizontal diffusion is
!                    activated, MUD_TNU2 is the mixing coefficient for
!                    the largest grid-cell in the domain.
!
!  MUD_TNU4        Nonlinar model lateral, biharmonic, constant, mixing
!                    coefficient (m4/s) for suspended cohesive sediment;
!                    [1:NCS,1:Ngrids]. If variable horizontal diffusion is
!                    activated, MUD_TNU4 is the mixing coefficient for
!                    the largest grid-cell in the domain.
!
!  ad_MUD_TNU2     Adjoint-based algorithms lateral, harmonic, constant,
!                    mixing coefficient (m2/s) for suspended cohesive
!                    sediment; [1:NCS,1:Ngrids]. If variable horizontal
!                    diffusion is activated, ad_MUD_TNU2 is the mixing
!                    coefficient for the largest grid-cell in the domain.
!
!  ad_MUD_TNU4     Adjoint-based algorithms lateral, harmonic, constant,
!                    mixing coefficient (m4/s) for suspended cohesive
!                    sediment; [1:NCS,1:Ngrids]. If variable horizontal
!                    diffusion is activated, ad_MUD_TNU4 is the mixing
!                    coefficient for the largest grid-cell in the domain.
!
!  MUD_Sponge      Logical switches (TRUE/FALSE) to increase horizontal
!                    diffusivity of cohesive sediment tracers in sponge
!                    areas of the domain. The CPP option SPONGE is now
!                    deprecated and replaced with this switch to
!                    facilitate or not sponge areas of desired tracer
!                    in a particular nested grid.
!
!  MUD_AKT_BAK     Background vertical mixing coefficient (m2/s),
!                    AKT_BAK(idsed(i)) with i=1:NCS.
!
!  MUD_AKT_fac     Adjoint-based algorithms vertical mixing, basic state,
!                   scale factor (nondimensional) for sediment tracer
!                   variables; [1:NCS,1:Ngrids] values are expected. In
!                   some applications, a smaller/larger values of vertical
!                   mixing are necessary for stability. It is only used
!                   when FORWARD_MIXING is activated.
!
!  MUD_TNUDG       Nudging time scale (days), TNUDG(idsed(i)) with i=1:NCS.
!                    Inverse scale will be computed internally.
!
!  MUD_MORPH_FAC   Morphological time scale factor (nondimensional; greater
!                    than or equal to 1.0). A value of 1.0 has no scale
!                    effect.
!
!  MUD_Ltsrc       Logical switches (T/F) to activate cohesive sediment tracer
!                    variables point Sources/Sinks; [1:NCS,1:Ngrids] values
!                    are expected.
!
!                      MUD_Ltsrc(  1,ng)           mud_01
!                      ...                         ...
!                      MUD_Ltsrc(NCS,ng)           ...
!
!                    Recall that these switches are usually activated to add
!                    river runoff as a point source.  At minimum, it is
!                    necessary to specify both temperature and salinity for
!                    all rivers. The other tracers are optional. The user needs
!                    to know the correspondence between sediment variables and
!                    indices idsed(1:NCS) when activating one or more of these
!                    switches.
!
!                    This logical switch REPLACES and ELIMINATES the need to
!                    have or read the variable "river_flag(river)" in the input
!                    rivers forcing NetCDF file:
!
!                      double river_flag(river)
!                        river_flag:long_name = "river runoff tracer flag"
!                        river_flag:option_0 = "all tracers are off"
!                        river_flag:option_1 = "only temperature"
!                        river_flag:option_2 = "only salinity"
!                        river_flag:option_3 = "both temperature and salinity"
!                        river_flag:units = "nondimensional"
!
!                    This logic was too cumbersome and complicated when
!                    additional tracers are considered. However, this change
!                    is backward compatible.
!
!                    This logical switch will be used to activate the reading
!                    of respective tracer variable from input river forcing
!                    NetCDF file. If you want to add other tracer variables
!                    (other than temperature and salinity) as a source for a
!                    particular river(s), you just need to specify such values
!                    on those river(s). Then, set the values to ZERO on the
!                    other river(s) that do NOT require such river forcing for
!                    that tracer. Recall that you need to specify the tracer
!                    values for all rivers, even if their values are zero.
!
!  MUD_Ltclm       Logical switches (T/F) to process cohesive sediment tracer
!                    climatology.  The CPP option TCLIMATOLOGY is now obsolete
!                    and replaced with these switches to facilitate nesting
!                    applications. Currently, the CLIMA(ng)%tclm is used for
!                    horizontal mixing, sponges, and nudging.
!
!
!                      MUD_Ltclm(  1,ng)           mud_01
!                      ...                         ...
!                      MUD_Ltclm(NCS,ng)           ...
!
!                    These switches also controls which climatology tracer
!                    fields needs to be processed.  So we may reduce the
!                    memory allocation for the CLIMA(ng)%tclm array.
!
!  MUD_Tnudge      Logical switches (T/F) to activate nugding of cohesive
!                    sediment tracer climatology. These switches also control
!                    which sediment tracer variables to nudge. The CPP option
!                    TCLM_NUDGING is now obsolete and replaced with these
!                    switches to facilitate nesting.
!
!                      MUD_Tnudge(  1,ng)          mud_01
!                      ...                         ...
!                      MUD_Tnudge(NCS,ng)          ...
!
!                    User also needs to TURN ON the respective logical switches
!                    "MUD_Ltclm", described above, to process the required 3D
!                    sediment tracer climatology data. This data can be set
!                    with analytical functions (ANA_TCLIMA) or read from input
!                    climatology NetCDF file(s).
!
!                    The nudging coefficients CLIMA(ng)%Tnudgcof can be set
!                    with analytical functions in "ana_nudgcoef.h"  using CPP
!                    option ANA_NUDGCOEF.  Otherwise, it will be read from
!                    NetCDF file NUDNAME.
!
!  Hout(idmud)     Logical switches to activate writing of cohesive sediment
!                    concentration into HISTORY NetCDF file,
!                    Hout(idTvar(idsed(i))) with i=1:NCS.
!
!  Hout(iMfrac)    Logical switches to activate writing of cohesive sediment
!                    class fraction composition of each bed layer into HISTORY
!                    NetCDF file, Hout(idfrac(i)) with i=1,NCS.
!
!  Hout(iMmass)    Logical switches to activate writing of cohesive sediment
!                    mass of each bed layer into HISTORY NetCDF file,
!                    Hout(idsed(i)) with i=1,NCS.
!
!  Hout(iMUbld)    Logical switches to activate writing of cohesive sediment
!                    bed load at U-points into HISTORY NetCDF file,
!                    Hout(idsed(i)) with i=1,NCS.
!
!  Hout(iMVbld)    Logical switches to activate writing of cohesive sediment
!                    bed load at V-points into HISTORY NetCDF file,
!                    Hout(idsed(i)) with i=1,NCS.
!
!  Qout(idmud)     Logical switches to activate writing of cohesive sediment
!                    concentration into QUICKSAVE NetCDF file,
!                    Qout(idTvar(idsed(i))) with i=1:NCS.
!
!  Qout(iMfrac)    Logical switches to activate writing of cohesive sediment
!                    class fraction composition of each bed layer into
!                     QUICKSAVE NetCDF file, Qout(idfrac(i)) with i=1,NCS.
!
!  Qout(iMmass)    Logical switches to activate writing of cohesive sediment
!                    mass of each bed layer into QUICKSAVE NetCDF file,
!                    Qout(idsed(i)) with i=1,NCS.
!
!  Qout(iMUbld)    Logical switches to activate writing of cohesive sediment
!                    bed load at U-points into QUICKSAVE NetCDF file,
!                    Qout(idsed(i)) with i=1,NCS.
!
!  Qout(iMVbld)    Logical switches to activate writing of cohesive sediment
!                    bed load at V-points into QUICKSAVE NetCDF file,
!                    Qout(idsed(i)) with i=1,NCS.
!
!  Aout(*M...)     Logical switches to activate writing of time-averaged
!                    cohesive sediment concentration into AVERAGE NetCDF
!                    file, Aout(idTvar(idsed(i))) with i=1:NCS.
!
!                    Aout(idmud)                  suspended concentration
!
!                    Aout(iMTTav)                 quadratic <t*t> tracer terms
!                    Aout(iMUTav)                 quadratic <u*t> tracer terms
!                    Aout(iMVTav)                 quadratic <v*t> tracer terms
!                    Aout(MHUTav)                 tracer volume flux, <Huon*t>
!                    Aout(MHVTav)                 tracer volume flux, <Hvom*t>
!
!                    Aout(iMUbld)                 bed load at U-points
!                    Aout(iMVbld)                 bed load at V-points
!
!  Dout(MT....)    Logical switches to activate writing of time-averaged
!                    cohesive tracers diagnostic terms into DIAGNOSTIC
!                    NetCDF file, Dout(idsed(i),MT....) with i=1,NCS.
!
!                    Dout(MTrate)   Time rate of change
!                    Dout(MThadv)   Horizontal total advection
!                    Dout(MTxadv)   Horizontal  XI-advection
!                    Dout(MTyadv)   Horizontal ETA-advection
!                    Dout(MTvadv)   Vertical advection
!                    Dout(MThdif)   Horizontal total diffusion
!                    Dout(MTxdif)   Horizonta1  XI-diffusion
!                    Dout(MTydif)   Horizontal ETA-diffusion
!                    Dout(MTsdif)   Horizontal   S-diffusion
!                    Dout(MTvdif)   Vertical diffusion
!
